Making Neapolitan Pizza with Whole Foods Ancient Grain Pizza Dough

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A Neapolitan-Style Experiment

Is pizza dough better with just the traditional ingredients? Or does getting creative make for a better pie? To find out, I put Whole Foods Ancient Grain Pizza Dough to the test, making a Neapolitan-style pizza at high heat to see if it could deliver on texture and flavor.

Whole Foods Ancient Grain Pizza Dough

Ancient grains in bread always sounds like a great idea—healthier ingredients, more nutrients, a more complex flavor—but does it actually make for a good pizza? Can it hold up making a high-temperature Neapolitan?

Prime Roots Koji Salami Pizza

Over the past few months, I’ve been experimenting with several pre-made doughs and have found myself pleasantly surprised with how both Whole Foods and Trader Joe’s doughs have performed. Both of their “plain” doughs have done very well in my pizza oven. But I was quite skeptical about how their Ancient Grain Pizza Dough would handle the heat. There’s Quinoa, Chia Seeds, Amaranth Seeds, and Millet Seeds in the dough and I was pretty worried those could badly burn.

But, I wasn’t going to rest until I knew for myself!

Why Whole Foods Ancient Grain Pizza Dough?

Whole Foods Ancient Grain Pizza Dough.

Whole Foods leans heavily into their commitment to high-quality, natural, and organic foods, along with its strict ingredient standards and focus on sustainability. Unlike conventional supermarkets, Whole Foods bans artificial preservatives, colors, flavors, sweeteners, and hydrogenated fats from all the products it sells, ensuring that customers have access to cleaner, minimally processed foods.

Whole Foods Ancient Grain Pizza Dough Nutritional Information.

So, while maybe not as good as making dough yourself, they certainly make one worth using at home.

Why Ancient Grains?

Ancient grains are considered healthy because they are less processed, nutrient-dense, and often higher in fiber, protein, and essential minerals compared to modern refined grains. Unlike conventional wheat, which has been selectively bred for yield and gluten content, ancient grains like the spelt, khorasan (Kamut), and quinoa used in this dough have remained largely unchanged for thousands of years, retaining their original nutritional profiles.

Add to that some seeds for texture, flavor, and their healthy contribution, you’ve got what I’d call a nicely supplemented pizza (remember, the main ingredient is still enriched flour and there are some preservatives).

I won’t profess to be a dietician, but it seems Whole Foods has done a decent job introducing ancient grains to elevate the healthy factor and flavor of this dough.

Starting the Ancient Grain Experiment

Pulling the Whole Foods Ancient Grain Dough from the fridge, you’ll notice its slightly darker color and a texture that felt a little more structured than typical white-flour dough. This despite the prime ingredient is enriched unbleached (and unbromated) wheat flour. The color is likely from the Whole Khorasan Flour and Whole Spelt Flour.

A package of dough ($4.99 here in California) is 20 ounces – which is pretty much too big for most pizzas (unless you’re making a Detroit), so I split the dough and made two pizzas: one classic Neapolitan-style pizza and one topped with Prime Roots Koji Salami.

Stretching and Handling

Right out of the package, the dough had a slightly firmer texture than typical pizza dough. It was a bit bumpy from the seeds, but it stretched well without tearing, which is always a good sign. A few of the seeds came off while shaping the dough, but actually far less than I expected.

Whole Foods Ancient Grain Pizza Dough on the pizza peel.

Tip: my first pizza puffed up quite a LOT so for my second pizza, I docked the dough a bit to try and tame that. This prevents excessive puffing and ensures toppings like salami or cheese stay in place. Even then, it was still very puffy in the crust (which I like) but I was better able to control it.

Lots of puff in this crust!

What You Need for Your Whole Foods Ancient Grains Neapolitan Pizza

For my Neapolitan-style pizza, I used:

Ancient Grains Neapolitan Ingredients
  • Dough: 10 ounces of Whole Foods Ancient Grain Pizza Dough
  • Sauce: 3 ounces of fresh tomato sauce
  • Cheese: 2 ounces of fresh mozzarella
  • Baking Temp: >800°F in a pizza oven
  • Finishing Touch: Fresh basil

Ancient Grains Pizza Dough: Baking Performance at High Heat

The results? A beautifully blistered, crispy crust with a soft interior. The ancient grains added a subtle nutty flavor, but the texture remained light and airy rather than dense or heavy.

Whole Foods Ancient Grain Pizza

For my second pizza, I used the same dough but topped it with Prime Roots’ Koji Salami. The salami’s peppery, umami-rich flavor paired well with the slightly earthy, whole-grain character of the crust. Because this dough puffs more than standard white dough, the salami stayed in place better when I docked the dough near the edges.

Remove your Prime Roots Salami Pizza from the oven and let rest before cutting.

Flavor and Texture

  • Crisp on the outside, airy on the inside
  • Light chew with subtle whole grain nuttiness
  • Puffs up significantly, so docking is recommended
  • Pairs well with bold toppings like cured meats (like salami) or spicy sauces

One thing to keep in mind: The sodium content is on the higher side—about 290mg per 2 ounces of dough. If you eat an entire 12-inch pizza (10 ounces of dough), that adds up quickly. It’s something to be aware of if you’re watching your sodium intake.


Final Thoughts: Would I Use This Dough Again?

Absolutely. Whole Foods Pizza Dough has performed well for me in a few recipes now. Plus, Whole Foods Ancient Grain Pizza Dough offers a nice health supplement and extra complexity of flavor. It stretches well, bakes beautifully, and has a slightly nutty, whole-grain flavor without being too dense or heavy. If you like a fluffy, puffy crust, this is a great option—just be prepared to dock the dough if you want to control the rise.

Would I recommend it over standard pizza dough? It depends on what you’re looking for. I’m still a fan of making dough myself, but life can get in the way. If you love a classic Neapolitan-style crust with just a hint of ancient grain complexity, this is a solid choice. It’s definitely something that will shake up your next pizza night!

Prime Roots Koji Salami Pizza

Whole Foods Ancient Grain Pizza Recipe

Todd Mitchell
A Neapolitan-style pizza (optionally using Koji Salami).
No ratings yet
Prep Time 10 minutes
Cook Time 5 minutes
Total Time 25 minutes
Course Main Course
Cuisine American, Italian
Servings 2 people
Calories 495 kcal

Equipment

  • 1 Wood-burning pizza oven This is ideal for a classic Neapolitan style pizza, but use what you've got!
  • 1 Cutting board
  • 1 Pizza Cutter

Ingredients
  

  • 10 ounces Pizza Dough ball (~10 ounces) (You can use pre-made dough or refer to our recipe for making AVPN Neapolitan dough)
  • 2 Ounces Koji Salami We used Prime Roots (about 6 thin, large slices)
  • 3 Tbsp Flour For dusting your work surface.
  • .25 Cups Tomato sauce (Refer to our recipe for making your own sauce from canned tomatoes or try Mutti brand sauce)
  • 2.5 Ounces Fresh mozzarella (approximately 1/4 ball)
  • 6 leaves Basil To taste

Instructions
 

Prepare the Dough

  • Remove the Ancient Grains Pizza dough from the fridge and separate into two 10 ounce dough balls.
  • Cover with a lightly damp tea towel and let it rest for at least 30 minutes to come to room temperature.
  • Preheat your pizza oven to ideally about 800°F to 900°F.
    Adding wood to the pizza oven.
  • Put 1 tablespoon of flour on your work surface and place the dough.
    Whole Foods Ancient Grain Pizza Dough
  • Begin stretching your pizza dough on your work surface. With 9 to 10 ounces of pizza dough, you should be able to make an 12" to 14" pizza, depending on the dough. True Neapolitan pizza will leave about a half inch outer ring slightly taller than the center.

Prepare Before Putting the Dough on the Peel

  • Put 1 teaspoon of flour on your pizza peel.
  • Prepare all of your ingredients – get them ready to apply to the pizza quickly.
  • If you are using fresh mozzarella, remove your mozzarella from the water, dry with a paper towel, and chop into slices or strips.
  • Check your pizza oven temperature. Add more wood if necessary. Do not proceed to the next step if your oven is not ready.
    Pizza oven smoking as it comes up to temperature.

Apply the Toppings

  • Transfer your dough to the pizza peel.
    Transfer the ancient grain dough to your pizza peel.
  • You will want to quickly apply your toppings and get the pizza into the oven before the dough sticks to the peel.
  • Apply the tomato sauce to the center of the pizza. Use a spoon to spread the sauce out from the center in a spiral pattern but keeping the sauce off of the outer ring.
    Spread the sauce over the ancient grain dough.
  • Adding meat (or a meat substitute) is optional. We used Koji Salami. Distribute your slices of Koji Salami on the pizza.
    Evenly distribute the Prime Roots salami over the pizza.
  • Distribute the mozzarella cheese evenly over the pizza.
    Add fresh mozzarella cheese.

Cooking with an Outdoor Pizza Oven

  • Check the pizza oven temperature again. If you have an infrared thermometer, check for the hottest part of the pizza stone.
    Infrared thermometer
  • Launch the pizza into the oven on the hottest part of the stone without being in the flames.
  • Before rotating the pizza, make sure that Rotate the pizza one quarter turn every 45 seconds. Generally, the pizza will be done in 6 minutes or less. So watch it closely!
    Cook the pizza in your oven and rotate.
  • Remove the pizza from the oven and let it rest for about 3 minutes.
    Remove your Prime Roots Salami Pizza from the oven and let rest before cutting.
  • Place your basil leaves on the pizza.
  • Cut and serve immediately.
    Prime Roots Koji Salami Pizza

Notes

Conventional Oven option:
  • If you are going to cook this in a conventional oven, you’ll want the highest temperature you can get the oven to. 
  • If you have a pizza stone (or pizza steel), that’s going to help a lot in getting the most authentic crust. If not, a pizza pan (or cookie sheet) will still turn out a great pizza.
  • You can either start the pizza on a pan (or cookie sheet) and transfer it to the stone after about 15 minutes (when the crust is firm enough to be safely transferred). At this point, turn off the oven and let the pizza cook on the stone for another 5 minutes. Remove and let rest on a cutting board for another 5 minutes before cutting and serving.
  • Alternatively, you can start by launching the pizza directly to the pizza stone in your oven. This is more tricky and you might want to practice with some dough with no toppings!

Nutrition

Calories: 495kcalCarbohydrates: 71gProtein: 21gFat: 12gSaturated Fat: 6gPolyunsaturated Fat: 0.4gMonounsaturated Fat: 2gCholesterol: 28mgSodium: 1532mgPotassium: 160mgFiber: 7gSugar: 2gVitamin A: 451IUVitamin C: 2mgCalcium: 411mgIron: 6mg
Keyword Koji Salami, Neapolitan Pizza, salami, Vegetarian pizza
Tried this recipe?Let us know how it was!
Making Neapolitan Pizza with Whole Foods Ancient Grain Pizza Dough

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